Core publication

Babin D, Sommermann L, Chowdhury SP, Behr JH, Sandmann M, Neumann G, Nesme J, Sørensen SJ, Schellenberg I, Rothballer M, Geistlinger J, Smalla K, Grosch R. 2021. Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories. FEMS Microbiology Ecology, https://doi.org/10.1093/femsec/fiab027.

Windisch S, Sommermann L, Babin D, Chowdhury P S, Grosch R, Moradtalab N, Walker F, Höglinger B, El-Hasan A, Armbruster W, Nesme J, Sörensen SJ, Schellenberger I, Geistlinger J, Smalla K, Rothballer M, Ludewig U, Neumann G. 2021. Impact of long-term organic and mineral fertilization on rhizosphere metabolites, root-microbial interactions and plant health of lettuce. Frontiers in Microbiology 11, 597745, https://doi.org/10.3389/fmicb.2020.597745.

Moradtalab N, Ahmed A, Geistlinger J, Walker F, Höglinger B, Ludewig U, Neumann G, 2020. Synergisms of microbial consortia, N Forms, and micronutrients alleviate oxidative damage and stimulate hormonal cold stress adaptations in maize. Front. Plant Sci. 11:396., https://doi.org/10.3389/fpls.2020.00396.

Techen A-K, Helming K, Brüggemann N, Veldkamp E, Reinhold-Hurek B, Lorenz M, Bartke S, Heinrich U, Amelung W, Augustin K, Boy J, Corre M, Duttman R, Gebbers R, Gentsch N., Grosch R., Guggenberger G, Kern J, Kiese R, Kuhwald M, Leinweber P, Schloter M, Wiesmeier M, Winkelmann T, Vogel H-J. 2020. Soil research challenges in response to emerging agricultural soil management. Advances in Agronomy 161, 179-240, https://doi.org/10.1016/bs.agron.2020.01.002.

Babin D, Sörensen S, Deubel A, Grosch R, Smalla K. 2019. Impact of long-term agricultural management practices on soil prokaryotic communities. Soil Biology and Biochemistry 129, 17-28, https://doi.org/10.1016/j.soilbio.2018.11.002.

Chowdhury SP, Babin D, Sandmann M, Jacquiod S, Sommermann L, Sørensen SJ, Fliesbach A, Mäder P, Geistlinger J, Smalla K, Rothballer M, Grosch R. 2019. Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce. Environmental Microbiology 10, 21(7), 2426-2439, https://doi.org/10.1111/1462-2920.14631.

Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, Pühler A, Schlüter A. 2019. Genetic potential of the biocontrol agent Pseudomonas brassicacearum (formerly P. trivialis) 3Re2-7 unraveled by genome mining, comparative genomics and transcriptomics. Genes 10, 601, https://doi.org/10.3390/genes10080601.

Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A. 2019. Effect of long-term farming practices on agricultural soil micro-biome members represented by metagenomically assembled genomes (MAGs) and their predicted plant-beneficial genes. Genes 10, 424, https://doi.org/10.3390/genes10060424.

Sandmann M, Grosch R, Graefe J. 2018. Early detection of Rhizoctonia solani infections of lettuce seedlings (Lactuca sativa var. capitata) using various features from fluorescence, thermography and NDVI imaging. Plant Disease 102, 1101-1107, https://doi.org/10.1094/PDIS-10-17-1536-RE.

Schlüter S, Grossmann C, Diel J, Wu G-M, Tischer S, Deubel A, Rücknagel J. 2018. Long-term effects of conventional and conservation tillage on soil structure and hydraulic properties. Geoderma 332, 10-19, https://doi.org/10.1016/j.geoderma.2018.07.001.

Sommermann L, Geistlinger J, Wibberg D, Deubel A, Zwanzig J, Babin D, Schlüter A, Schellenberg I. 2018. Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS One 13(4):e0195345, https://doi.org/10.1371/journal.pone.0195345.

Windisch S, Bott S, Ohler MA, Mock H-P, Lippmann R, Grosch R, Smalla K, Neumann G. 2017. Rhizoctonia solani and bacterial inoculants stimulate root exudation of antifungal compounds in lettuce in a soil-type specific manner. Agronomy 7, 44, https://doi.org/10.3390/agronomy7020044.


Associated publications

Bziuk N, Maccario L, Douchkov D, Lueck S, Babin D, Sørensen S, Schikora A, Smalla K (2021) Tillage shapes the soil and rhizosphere microbiome of barley – but not its susceptibility towards Blumeria graminis f. sp. hordei. FEMS Microbiol. Ecol., https://doi.org/10.1093/femsec/fiab018.

Cerecetto V, Smalla K, Nesme J, Garaycochea S, Fresia P, Sørensen S, Babin D, Leoni C (2021) Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems. FEMS Microbiol. Ecol., https://doi.org/10.1093/femsec/fiab023.

Fernandez-Gnecco G, Smalla K, Maccario L, Sørensen SJ, Barbieri P, Consolo VF, Covacevich F, Babin D (2021) Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas. FEMS Microbiol. Ecol., https://doi.org/10.1093/femsec/fiab007.

Gabbarini LA, Figuerola E, Frene JP, Robledo NB, Ibarbalz FM, Babin D, Smalla K, Erijman L, Wall LG (2021) Impacts of switching tillage to no-tillage and vice versa on soil structure, enzyme activities, and prokaryotic community profiles in Argentinean semi-arid soils, FEMS Microbiol. Ecol., https://doi.org/10.1093/femsec/fiab025.

Rodriguez PA, Rothballer M, Chowdhury SP, Nussbaumer T, Gutjahr C, Falter-Braun P. 2019. Systems biology of plant-microbiome interactions. Molecular Plant 12: 804-821, https://doi.org/10.1016/j.molp.2019.05.006.

Verwaaijen B., Wibberg D., Winkler A., Zrenner R., Bednarz H., Niehaus K., Grosch R., Pühler A., Schlüter A. 2019. A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani. Scientific reports 9, 7221, https://doi.org/10.1038/s41598-019-43706-5.

Hafiz FB, Moradtalab N, Goertz S, Rietz S, Dietel K, Humbeck K, Geistlinger J, Neumann G, Schellenberg I. Synergistic Effects of Root-endophytic Trichoderma Fungus and Bacillus on Early Root Colonization, Root Growth and Defence Gene Activation in Rapeseed. Molecular Plant-Microbe Interactions, under review.